{ "_id": "6a0fef37acfb0bcc41c74c48", "Package": "riAFTBART", "Type": "Package", "Title": "A Flexible Approach for Causal Inference with Multiple\nTreatments and Clustered Survival Outcomes", "Version": "0.3.3", "Authors@R": "c(\nperson(\"Liangyuan\", \"Hu\", role = \"aut\", email = \"lh707@sph.rutgers.edu\"),\nperson(\"Jiayi\", \"Ji\", role = \"aut\", email = \"jj869@sph.rutgers.edu\"),\nperson(\"Fengrui\", \"Zhang\", role = \"cre\", email = \"fz174@sph.rutgers.edu\"))", "Description": "Random-intercept accelerated failure time (AFT) model\nutilizing Bayesian additive regression trees (BART) for drawing\ncausal inferences about multiple treatments while accounting\nfor the multilevel survival data structure. It also includes an\ninterpretable sensitivity analysis approach to evaluate how the\ndrawn causal conclusions might be altered in response to the\npotential magnitude of departure from the no unmeasured\nconfounding assumption.This package implements the methods\ndescribed by Hu et al. (2022) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 05:44:04 UTC", "User": "root" }, "Author": "Liangyuan Hu [aut], Jiayi Ji [aut], Fengrui Zhang [cre]", "Maintainer": "Fengrui Zhang ", "Config/pak/sysreqs": "make libicu-dev libjpeg-dev libpng-dev", "Repository": "https://freyrray.r-universe.dev", "Date/Publication": "2024-05-30 02:42:11 UTC", "RemoteUrl": "https://github.com/cran/riAFTBART", "RemoteRef": "HEAD", "RemoteSha": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "MD5sum": "4255de539fdcc16e692e00224df574bd", "_user": "freyrray", "_type": "src", "_file": "riAFTBART_0.3.3.tar.gz", "_fileid": "44d4aa98f27ba8075a0d8ffdefe61342d6955fa587a0a7630f9c3032365e99b3", "_filesize": 153619, "_sha256": "44d4aa98f27ba8075a0d8ffdefe61342d6955fa587a0a7630f9c3032365e99b3", "_created": "2026-05-22T05:44:04.000Z", "_published": "2026-05-22T05:52:55.364Z", "_distro": "noble", "_jobs": [ { "job": 77323348552, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7153608296" }, { "job": 77323348560, "time": 141, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7153607670" }, { "job": 77323348534, "time": 151, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7153618230" }, { "job": 77323348539, "time": 158, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7153670732" }, { "job": 77323064419, "time": 175, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7153579577" }, { "job": 77323348529, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7153603166" }, { "job": 77323348551, "time": 134, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7153606510" }, { "job": 77323348548, "time": 116, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7153602852" }, { "job": 77323348566, "time": 85, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7153596959" } ], "_buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/riAFTBART", "_commit": { "id": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "author": "Fengrui Zhang ", "committer": "cran-robot ", "message": "version 0.3.3\n", "time": 1717036931 }, "_maintainer": { "name": "Fengrui Zhang", "email": "fz174@sph.rutgers.edu", "login": "freyrray", "description": "", "uuid": 159098634 }, "_registered": true, "_dependencies": [ { "package": "MCMCpack", "role": "Imports" }, { "package": "msm", "role": "Imports" }, { "package": "dbarts", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "BART", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "cowplot", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "twang", "role": "Imports" }, { "package": "nnet", "role": "Imports" }, { "package": "RRF", "role": "Imports" }, { "package": "randomForest", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "freyrray", "count": 1, "uuid": 159098634 } ], "_userbio": { "uuid": 159098634, "type": "user", "name": "freyrray" }, "_downloads": { "count": 626, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/riAFTBART" }, "_searchresults": 19, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/riAFTBART.html", "manual.pdf" ], "_realowner": "freyrray", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2022-02-09" }, { "version": "0.2.0", "date": "2022-02-15" }, { "version": "0.3.0", "date": "2022-04-10" }, { "version": "0.3.1", "date": "2022-05-16" }, { "version": "0.3.2", "date": "2022-05-17" }, { "version": "0.3.3", "date": "2024-05-29" } ], "_exports": [ "cal_PEHE", "cal_surv_prob", "dat_sim", "intree", "plot_gps", "riAFTBART", "riAFTBART_fit", "sa", "var_select" ], "_help": [ { "page": "cal_PEHE", "title": "Calculate the PEHE", "topics": [ "cal_PEHE" ] }, { "page": "cal_surv_prob", "title": "Calculate the survival probability from a fitted riAFT-BART model", "topics": [ "cal_surv_prob" ] }, { "page": "dat_sim", "title": "Simulate data with multiple treatments and clustered survival outcomes", "topics": [ "dat_sim" ] }, { "page": "intree", "title": "Interpreting Tree Ensembles with inTrees", "topics": [ "intree" ] }, { "page": "plot_gps", "title": "Plot the propensity score by treatment", "topics": [ "plot_gps" ] }, { "page": "plot.riAFTBART_estimate", "title": "Plot the trace plots for the parameters from a fitted riAFT-BART model", "topics": [ "plot.riAFTBART_estimate" ] }, { "page": "plot.riAFTBART_survProb", "title": "Plot the fitted survival curves from riAFT-BART model", "topics": [ "plot.riAFTBART_survProb" ] }, { "page": "riAFTBART", "title": "A flexible approach for causal inference with multiple treatments and clustered survival outcomes", "topics": [ "riAFTBART" ] }, { "page": "riAFTBART_fit", "title": "Fit a random effect accelerated failure time BART model", "topics": [ "riAFTBART_fit" ] }, { "page": "sa", "title": "Flexible Monte Carlo sensitivity analysis for unmeasured confounding", "topics": [ "sa" ] }, { "page": "var_select", "title": "Perform Variable Selection using Three Threshold-based Procedures", "topics": [ "var_select" ] } ], "_rundeps": [ "BART", "cli", "coda", "codetools", "cowplot", "cpp11", "data.table", "dbarts", "DBI", "deldir", "doParallel", "dplyr", "expm", "farver", "foreach", "gbm", "generics", "ggplot2", "glue", "gtable", "interp", "isoband", "iterators", "jpeg", "jsonlite", "labeling", "lattice", "latticeExtra", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixModels", "mcmc", "MCMCpack", "minqa", "mitools", "msm", "mvtnorm", "nlme", "nnet", "numDeriv", "pillar", "pkgconfig", "png", "purrr", "quantreg", "R6", "randomForest", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "rlang", "RRF", "S7", "scales", "SparseM", "stringi", "stringr", "survey", "survival", "tibble", "tidyr", "tidyselect", "twang", "utf8", "vctrs", "viridisLite", "withr", "xgboost", "xtable" ], "_score": 1.2787536009528289, "_indexed": true, "_nocasepkg": "riaftbart", "_universes": [ "freyrray" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.3", "date": "2026-05-22T05:46:22.000Z", "distro": "noble", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "d7dcff46c9b5bac18e10e823d462be77dd9c7eede51132bbea2ea07486021683", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.6.0", "os": "linux", "version": "0.3.3", "date": "2026-05-22T05:46:18.000Z", "distro": "noble", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "f03d8e40f292683a00a4aa246e7e1f02ce433b773a9c75c6776d72f9e36e2e13", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.5.3", "os": "mac", "version": "0.3.3", "date": "2026-05-22T05:47:21.000Z", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "612a0777679adc9f8cec0b52169a3cf96bf060889e60e8ae9c037a2deb1d316f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.6.0", "os": "mac", "version": "0.3.3", "date": "2026-05-22T05:51:48.000Z", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "1e06995dd9c927ee948800f26579acb626b5bfccf5eb83a80c7418f379c3cc71", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.3", "date": "2026-05-22T05:46:15.000Z", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "771c68ba2c4b6ff78731ac5c5760cca39d1e1d626ce36a0467f0d963c201efb5", "status": "success", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.7.0", "os": "win", "version": "0.3.3", "date": "2026-05-22T05:46:10.000Z", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "5bee8e6c56337cf2b5f8872b3b63530d9214aac9a28e36c0ba9f4149b8b399e0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.5.3", "os": "win", "version": "0.3.3", "date": "2026-05-22T05:45:51.000Z", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "46380ed14157c69475dae226f39edeb44d4e0f241c183446e585b28555b8a7d2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" }, { "r": "4.6.0", "os": "win", "version": "0.3.3", "date": "2026-05-22T05:45:19.000Z", "commit": "d7493e0d6f4fbecb53986dba6aeb928465b235ba", "fileid": "537c0a3b74510ccac00a02096adb82f6443d7c5916c674facd563edcecdbd052", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/freyrray/actions/runs/26220055375" } ] }